Welcome to BioTK’s documentation!¶
Overview¶
BioTK is a Python toolkit, containing a library and scripts, for various bioinformatics tasks:
- Differential expression analysis on microarray and RNA-seq data
- Functional and downstream analysis of DE gene lists
- Ontology handling
- Text mining, ranging from shallow NLP to relation extraction
- Efficient storage and querying of sets of genomic intervals (similar to BEDTools, GenomicRanges, etc.)